Note: Free software or software that has a campus license will be made available to all users; however, software that comes with limited licensing may only be available to the specific groups who have purchased said license.
Software available to all
| Name | Categories |
|---|---|
| Abaqus | Engineering |
| ABC toolbox | Biology |
| Adaptsite | Biology |
| Afni | Biology |
| Amanzi | Earth and Env |
| Ambertools | Biology, Chemistry |
| Ansys | Engineering |
| Arlequin | Biology |
| Awsemmd | Biology |
| bayescan | Biology |
| bayesphylogenies | Biology |
| bayestraits | Biology |
| BEAGLE-LIB | Biology |
| BEAST | Biology |
| Bedtools | Biology |
| biom | Biology |
| BLAST | Biology |
| Bowtie | Biology |
| BWA | Biology |
| CESM | Earth and Env |
| CHARMM | Chemistry |
| Chimera | Chemistry |
| COMSOL | Chemistry, Physics |
| Cufflinks | Biology |
| DIAMOND | Biology |
| disopred | Biology |
| dock | Chemistry |
| dssp | Biology |
| dtiprep | Biology |
| Espresso | Chemistry, Physics |
| ExaML | Biology |
| Exonerate | Biology |
| FastML | Biology |
| FastPHASE | Biology |
| FastQC | Biology |
| FFTW | Mathematics |
| Fluent | Engineering |
| FreeSurfer | Biology, Medicine |
| fsc | Biology |
| FSL | Biology |
| Gamess | Chemistry |
| garli | Biology |
| GATK | Biology |
| Gaussian | Chemistry |
| gdal | Geology |
| gloome | Biology |
| Guppy | Biology |
| Gromacs | Biology |
| hhsuite | Biology |
| HISAT2 | Biology |
| hmmer | Biology |
| IMa2 | Biology |
| iupred | Biology |
| Jellyfish | Biology |
| jModelTest2 | Biology |
| Jupyter | Data Science |
| kaks-calculator | Biology |
| lamarc | Biology |
| ldhat | Biology |
| InterProScan | Biology |
| lox | Biology |
| Kallisto | Biology |
| Kraken | Biology |
| LAMMPS | Chemistry, Physics |
| MAFFT | Biology |
| Mathematica | Mathematics |
| matlab | General |
| Mdynamix | Chemistry |
| mfix | Engineering |
| migrate-n | Biology |
| mmtsb | Biology |
| mobcal | Biology |
| modeller | Biology |
| molden | Visualization |
| MOTHUR | Biology |
| MrBayes | Biology |
| mricron | Biology |
| msABC | Biology |
| Multidivtim | Biology |
| MUSCLE | Biology |
| NAMD | Biology, Chemistry, Physics |
| nbo6 | Chemistry |
| ncl | Geology |
| NetCDF | Earth and Env |
| novoalign | Biology |
| NWchem | Chemistry |
| OpenFOAM | Engineering |
| paml | Biology |
| paraview | Visualization |
| parsimonator | Biology |
| phase | Biology |
| phylip | Biology |
| phyml | Biology |
| picard | Biology |
| proj | Geographics |
| prottest3 | Biology |
| psipred | Biology |
| pycogent | Biology |
| PySurfer | Biology, Medicine |
| Qchem | Chemistry |
| QIIME | Biology |
| R | Statistics |
| rapidnj | Biology |
| RAXML | Biology |
| RAXML-Light | Biology |
| readseq | Biology |
| recodon | Biology |
| RevolutionR | Statistics |
| Rosetta | Biology |
| samtools | Biology |
| Siesta | Biology, Chemistry |
| simcoal2 | Biology |
| slicer | Visualization |
| sphinx | Biology |
| Stata | Statistics |
| structurama | Biology |
| structure | Biology |
| tcs | Biology |
| tmhmm | Biology |
| TmoleX | Chemistry |
| tnt | Biology |
| tophat | Biology |
| trinity | Biology |
| turbomole | Chemistry |
| usearch | Biology |
| variscan | Biology |
| velvet | Biology |
| vmd | Visualization |
| vtk | Visualization |
Restricted Software by license
| Name | Categories | Availability |
|---|---|---|
| CHARMM | Molecular Dynamics | Group |
| Lumerical | FDTD | Group |
| Molpro | Quantum Chemistry | Group |
| VASP | Ab-initio QM calculations | Group |