Access
- Contact hpcadmin@fiu.edu to create an account.
Panther Cluster
- Hardware
- Over 3000 Intel-Based CPU cores
- High Memory Nodes with up to 1.5 TB of RAM/node
- Over 500 TB of High-Performance Parallel Storage
- 56 Gbps InfiniBand network for parallel computing
- GPU nodes
- Remote Desktop GUI
- Storage
- Shared scratch space
- 47 of NVME High Performance Parallel Storage (Lustre)
- User home directories
- Uses shared Parallel Storage (Lustre)
- Long-term archival storage available
- Off-site backup of data available
- Shared scratch space
- Slurm Scheduler
- Jobs are submitted through Slurm Workload Manager
- Software
- Over 200 software and analysis tools are pre-installed on the cluster:
| Matlab (parallel) | MIRA |
| R | MitoFinder |
| COMSOL | Molpro |
| Stata | Singularity |
| Compilers (Intel, PGI, gnu) | SPAdes |
| BLAST | SPSS |
| AMBER | FreeBayes |
| CHARMM | mothur |
| NAMD | MrBayes |
| Gaussian | SRA Toolkit |
| QChem | Stacks |
| Trinity | MUSCLE |
| Trinotate | Gaussian |
| SAMtools | NextDenovo |
| BamTools | NextFlow |
| Jupyter | NextPolish |
| MaSuRCA | Trimmomatic |
| RSEM | Trim Galore |
| Salmon | Velvet |
| Exonerate | Winnowmap |
| SIDR | OrthoFinder |
| Seqtk | Picard Tools |
| FastQC | Pilon |
| FastQC | InterProScan |
| Minimap2 | Jupyter |
And many more, with additional tools added by request.